AMBER Archive (2007)

Subject: Re: AMBER: Molecular dynamic issues

From: Chupakhin Vladimir (chupvl_at_gmail.com)
Date: Tue Jan 23 2007 - 08:50:56 CST

I have the same question :)
What if we leave a water in GB model?
so we will have solution of the water.
Water with the additional Force-Field Restrains?
I am just guessing...
Vladimir

> On 1/23/07, Sophie Barbe <sbarbe_at_insa-toulouse.fr> wrote
> 2- Is it better to use a cubic or an octahedral box to simulate the
dynamic of a
> protein in solution?

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