AMBER Archive (2007)

Subject: AMBER: Can't run Normal Mode Analysis !!!

From: jitrayut jitonnom (jitrayut.018_at_gmail.com)
Date: Sun Jan 21 2007 - 23:09:48 CST

Dear amber users,

I found a problem on running normal mode analysis. This is a command
line i type:

# mm_pbsa.pl nmode.in > mm_pbsa.log.save &

But i found this error appear:

Can't use an undefined value as an ARRAY reference at
/AMBER/amber9/src/mm_pbsa/mm_pbsa_statistics.pm line 1294.

what is this error ? and what i can do for solve this problem.
Moreover, the input file is attach below;

Here the input file (nmode.in)

@GENERAL
PREFIX enz_lig_wt
PATH ./
#
COMPLEX 0
RECEPTOR 0
LIGAND 1
#
COMPT XXX
RECPT XXX
LIGPT ./lig.top
#
GC 0
AS 0
DC 0
#
MM 0
GB 0
PB 0
MS 0
#
NM 1
@NM
DIELC 4
MAXCYC 1000
DRMS 0.1
@PROGRAMS

Any suggestions will be appreciated.

Thank you in advance.

Jitrayut
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