AMBER Archive (2007)

Subject: AMBER: PB Bomb in pb_aaradi(): No radius assigned for atom 4474 F3 f

From: emilia wu (emiliawu_at_dicp.ac.cn)
Date: Fri Jan 19 2007 - 07:15:56 CST


Dear amber users,

 I try to calculate the binding free energy of an inhibitor and a protein with MM/PBSA using Amber9,
but it stopped and the output tell me that"PB Bomb in pb_aaradi(): No radius assigned for atom
 4474 F3 f". and there is a fluorin atom in the inhibitor, so how to fix it, if I should add some
radius parameters for fluorin, which file should be modified, and what parameter should I use?

thanks in advance!

        emilia wu
        emiliawu_at_dicp.ac.cn
          2007-01-19
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