AMBER Archive (2007)

Subject: AMBER: solvation of protein using TIP3PBOX in amber 8

From: Syed Tarique Moin (tarisyed_at_yahoo.com)
Date: Sat Jan 13 2007 - 12:25:46 CST

Hello,
  
  Plz guide me as, during solvation my protein is not fully enclosed in a solvent, i.e protein is found to be away from solvent and solvent is found at one end or half covered the protein.
  
  I want assistance in this regard.
  
  Thanks in advance
  
  
  

Syed Tarique Moin,
Junior Research Fellow,
H.E.J. Research Institute of Chemistry,
International Center for Chemical and Biological Sciences,
University of Karachi, Karachi-75720, Pakistan

tarisyed_at_yahoo.com
tarisyed_at_hotmail.com
 
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