AMBER Archive (2007)Subject: AMBER: sander crashes during minimization
From: Seth Lilavivat (sethl_at_gatech.edu)
Date: Wed Jan 10 2007 - 13:29:15 CST
Dear Amber Community,
I have been using sander for some time now and this is the first encounter of
the problem. My current setup is as follows:
AMD 64
SuSE 10.1
Amber 8
iFort
I have been running many MD simulations on nucleic acid stuctures. The latest
one that I am trying to work results in a segmentation fault during the first
few seconds of the first stage of minimization. I have minimized and run MD on
other models and everything seems to work fine. However, with this one the
error I get is:
forrtl: severe (174): SIGSEGV, segmentation fault occurred
What are some things I can do to go about solving this problem?
Thanks,
SETH
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