AMBER Archive (2007)

Subject: AMBER: How to do minimization..

From: sai vikram (vsaivikram_at_gmail.com)
Date: Mon Jan 08 2007 - 09:30:59 CST


 Hi all,

 It is a basic question.

I am doing simulation of a system. which is having organic solvent,
surfactant and water .

How can i do minimization?

How to treat water in the system?

Is it necessary to do with restrain, on surfactants at first and later with
out?

How could i know the relaxation time of an organic solvent?

 Can someone please advice me here.

 Thanks in advance

Vikram

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