AMBER Archive (2007)

Subject: Re: AMBER: question about the testing of AMBER9

From: Shaoqing.Zhang_at_mail.uh.edu
Date: Sun Jan 07 2007 - 19:18:05 CST

Thank you very much for your reply. I tried what you suggested; however, it doesn't work. Do you think there is something to do with the "icc" compiler?

This is exactly part of  the output of "make", which will show the environment of error:

icc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o xaTorsionParmTable.o xaTorsionParmTable.c
icc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o xaImproperParmTable.o xaImproperParmTable.c
icc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o xaHBondParmTable.o xaHBondParmTable.c
icc    -o xaLeap basics.o sysdepend.o stringExtra.o varArray.o getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o  pdb_sscanf.o pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o  dictionary.o database.o nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o  collection.o container.o internal.o list.o loop.o molecule.o  oDouble.o oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o tripos.o graphUtil.o select.o amber.o build.o elements.o library.o chirality.o minimizer.o model.o parmLib.o pdbFile.o tools.o variables.o parser.o help.o helptext.o octree.o commands.o mathop.o block.o restraint.o hybrid.o xTank.o xAction.o x3d.o xBasics.o  xaLeapc.o xaUnitEditor.o xaTable.o xaAtomTable.o  XrawRegistr.o xaCommand.o xaTools.o  xaAtomParmTable.o xaBondParmTable.o  xaAngleParmTable.o xaParmEditor.o xaTorsionParmTable.o xaImproperParmTable.o  xaHBondParmTable.o ../Xraw/libXaw.a ../Wc/libWcLeap.a ../Xpm/libXpm.a ../Xmu/libXmu.a -L/usr/X11R6/lib64 -L/usr/X11R6/lib -lXt -lXext -lSM -lICE -lX11 -lm -lpthread
IPO link: can not find -lXt
icc: error: problem during multi-file optimization compilation (code 1)
make[2]: *** [xaLeap] Error 1
make[2]: Leaving directory `/home/amber9/amber9/src/leap/src/leap'
make[1]: *** [install] Error 2

Looking forward to your reply.

Shaoqing
 

----- Original Message -----
From: Mark Williamson <Mark.Williamson_at_imperial.ac.uk>
Date: Sunday, January 7, 2007 5:41 pm
Subject: Re: AMBER: question about the testing of AMBER9
To: amber_at_scripps.edu

> Shaoqing.Zhang_at_mail.uh.edu wrote:
>
> > IPO link: can not find -lXt
> > icc: error: problem during multi-file optimization compilation
> (code 1)
> >
>
> Iff you are using FC5:
>
> Try as the root user:
>   yum install libXt libXt-devel libXext libXext-devel
>
> Yum is a very handy tool that will fetch these RPMS, resolve any
> RPM
> dependencies and then install the RPM.
>
> Then, as your normal user, try again to compile:
>   cd $AMBERHOME/src
>   make clean
>   make
>
> regards,
>
> Mark
> -----------------------------------------------------------------
> ------
> The AMBER Mail Reflector
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