AMBER Archive (2007)

Subject: AMBER: Simulation of a charged system

From: Kijeong Kwac (pine994_at_naver.com)
Date: Fri Jan 05 2007 - 17:08:42 CST

Hello, Amber users and developers:
For a simulation of a charged protein in explicit solvent using the PME, simulation without counter ions should be preferred to using counter ions?
I have read in the archive that Amber provides a uniform neutralizing plasma to make the system neutral.
Could anybody give some references about this issue?
Thank you in advance.
 
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