^ actions.c(6584): warning #266: function declared implicitly printAtomCompact(fpout, idonor, action->state); ^ actions.c(6591): warning #266: function declared implicitly printAtomCompact(fpout, iacceptorH, action->state); ^ actions.c(6751): warning #186: pointless comparison of unsigned integer with zero if ( ( kalloc * sizeof(float) ) < 0 ) { ^ actions.c(7101): warning #266: function declared implicitly printAtomMask(action->mask, action->state); ^ actions.c(7916): warning #266: function declared implicitly printAtomMask(minfo->mask1, action->state); ^ actions.c(9293): warning #266: function declared implicitly printAtomMask(action->mask, action->state); ^ actions.c(9603): warning #266: function declared implicitly printAtomMask(action->mask, action->state); ^ actions.c(10003): warning #266: function declared implicitly printAtomMask(info->mask1, action->state); ^ actions.c(10011): warning #266: function declared implicitly printAtomMask(info->mask2, action->state); ^ actions.c(10019): warning #266: function declared implicitly printAtomMask(info->mask3, action->state); ^ actions.c(10027): warning #266: function declared implicitly printAtomMask(info->mask4, action->state); ^ actions.c(10035): warning #266: function declared implicitly printAtomMask(info->mask5, action->state); ^ actions.c(10661): warning #266: function declared implicitly printAtomMask(info->solventMask, action->state); ^ actions.c(11018): warning #266: function declared implicitly printAtomMask(action->mask, action->state); ^ actions.c(11210): warning #266: function declared implicitly printAtomMask(action->mask, action->state); ^ actions.c(11225): warning #266: function declared implicitly srandom((unsigned) action->iarg2); ^ actions.c(11345): warning #266: function declared implicitly w = random() % action->state->solventMolecules; ^ actions.c(11573): warning #266: function declared implicitly printAtomMask(action->mask, action->state); ^ actions.c(11938): warning #266: function declared implicitly printAtomMask(action->mask, action->state); ^ actions.c(12128): warning #266: function declared implicitly printAtomMask(action->mask, action->state); ^ actions.c(12578): warning #266: function declared implicitly printAtomMask(mask, oldstate); ^ actions.c(12582): warning #266: function declared implicitly ptrajPrintState(oldstate); ^ actions.c(12592): warning #266: function declared implicitly ptrajClearState( (ptrajState **) &action->carg1); ^ actions.c(12715): warning #266: function declared implicitly printAtomMask(action->mask, action->state); ^ actions.c(12846): warning #266: function declared implicitly printAtomMask(action->mask, action->state); ^ actions.c(12982): warning #266: function declared implicitly printAtomMask(zapMask, state); ^ actions.c(12989): warning #266: function declared implicitly ptrajClearState(&state); ^ actions.c(13642): warning #266: function declared implicitly printAtomMask(vectorInfo->mask, action->state); ^ actions.c(14278): warning #266: function declared implicitly printAtomMask(info->soluteMask, action->state); ^ actions.c(14527): warning #266: function declared implicitly printAtomMask(action->mask, action->state); ^ actions.c(14628): warning #266: function declared implicitly ptrajClearState(&trajInfo->state); ^ icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o analyze.o analyze.c analyze.c(538): warning #266: function declared implicitly dspev_(jobz, uplo, &nelem, mat, eigval, vout, &ldz, workd, &info); ^ analyze.c(1839): warning #266: function declared implicitly parseHBondDonor(argumentStackPointer, hbondInfo->state, maskD); ^ analyze.c(1881): warning #266: function declared implicitly parseHBondAcceptor(argumentStackPointer, hbondInfo->state, ^ analyze.c(1996): warning #266: function declared implicitly printHBondInfo(hbondInfoSelect->numdonor, hbondInfoSelect->donor, ^ analyze.c(2089): warning #266: function declared implicitly sortIndexFloat(lifetimes, sortindex, acceptors*donors); ^ analyze.c(2112): warning #266: function declared implicitly printAtom(stdout, idonor, hbondInfo->state); ^ analyze.c(2119): warning #266: function declared implicitly printAtom(stdout, iacceptorH, hbondInfo->state); ^ analyze.c(2427): warning #266: function declared implicitly cfftf_(&ndata2, data1, table); ^ analyze.c(2450): warning #266: function declared implicitly cfftb_(&ndata2, data1, table); ^ analyze.c(2785): warning #266: function declared implicitly cffti_(&ndata2, table); ^ cpp -traditional -P -DLES ../nmode/thermo.f > _thermo.f ifort -ldl -c -w95 -ftz -O2 -FR -o thermo.o _thermo.f cpp -traditional -P ../sander/pubfft.f > _pubfft.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -FR -FR -o pubfft.o _pubfft.f cd ../lapack; make make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lapack' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' ar rv lapack.a xerbla.o r - xerbla.o ranlib lapack.a make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lapack' cd ../arpack; make make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/arpack' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' cpp -traditional -P ivout.f > _ivout.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o ivout.o _ivout.f cpp -traditional -P dvout.f > _dvout.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dvout.o _dvout.f cpp -traditional -P dgetv0.f > _dgetv0.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dgetv0.o _dgetv0.f cpp -traditional -P dlaqrb.f > _dlaqrb.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dlaqrb.o _dlaqrb.f cpp -traditional -P dnaitr.f > _dnaitr.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dnaitr.o _dnaitr.f cpp -traditional -P dnapps.f > _dnapps.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dnapps.o _dnapps.f cpp -traditional -P dnaup2.f > _dnaup2.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dnaup2.o _dnaup2.f cpp -traditional -P dnaupd.f > _dnaupd.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dnaupd.o _dnaupd.f cpp -traditional -P dnconv.f > _dnconv.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dnconv.o _dnconv.f cpp -traditional -P dneigh.f > _dneigh.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dneigh.o _dneigh.f cpp -traditional -P dmout.f > _dmout.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dmout.o _dmout.f cpp -traditional -P dneupd.f > _dneupd.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dneupd.o _dneupd.f cpp -traditional -P dngets.f > _dngets.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dngets.o _dngets.f cpp -traditional -P dsaitr.f > _dsaitr.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dsaitr.o _dsaitr.f cpp -traditional -P dsapps.f > _dsapps.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dsapps.o _dsapps.f cpp -traditional -P dsaup2.f > _dsaup2.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dsaup2.o _dsaup2.f cpp -traditional -P dsaupd.f > _dsaupd.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dsaupd.o _dsaupd.f cpp -traditional -P dsconv.f > _dsconv.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dsconv.o _dsconv.f cpp -traditional -P dseigt.f > _dseigt.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dseigt.o _dseigt.f cpp -traditional -P dsesrt.f > _dsesrt.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dsesrt.o _dsesrt.f cpp -traditional -P dseupd.f > _dseupd.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dseupd.o _dseupd.f cpp -traditional -P dsgets.f > _dsgets.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dsgets.o _dsgets.f cpp -traditional -P dsortc.f > _dsortc.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dsortc.o _dsortc.f cpp -traditional -P dsortr.f > _dsortr.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dsortr.o _dsortr.f cpp -traditional -P dstatn.f > _dstatn.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dstatn.o _dstatn.f cpp -traditional -P dstats.f > _dstats.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dstats.o _dstats.f cpp -traditional -P dstqrb.f > _dstqrb.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o dstqrb.o _dstqrb.f cpp -traditional -P svout.f > _svout.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o svout.o _svout.f cpp -traditional -P sgetv0.f > _sgetv0.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o sgetv0.o _sgetv0.f cpp -traditional -P slaqrb.f > _slaqrb.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o slaqrb.o _slaqrb.f cpp -traditional -P snaitr.f > _snaitr.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o snaitr.o _snaitr.f cpp -traditional -P snapps.f > _snapps.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o snapps.o _snapps.f cpp -traditional -P snaup2.f > _snaup2.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o snaup2.o _snaup2.f cpp -traditional -P snaupd.f > _snaupd.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o snaupd.o _snaupd.f cpp -traditional -P snconv.f > _snconv.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o snconv.o _snconv.f cpp -traditional -P sneigh.f > _sneigh.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o sneigh.o _sneigh.f cpp -traditional -P smout.f > _smout.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o smout.o _smout.f cpp -traditional -P sneupd.f > _sneupd.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o sneupd.o _sneupd.f cpp -traditional -P sngets.f > _sngets.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o sngets.o _sngets.f cpp -traditional -P ssaitr.f > _ssaitr.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o ssaitr.o _ssaitr.f cpp -traditional -P ssapps.f > _ssapps.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o ssapps.o _ssapps.f cpp -traditional -P ssaup2.f > _ssaup2.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o ssaup2.o _ssaup2.f cpp -traditional -P ssaupd.f > _ssaupd.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o ssaupd.o _ssaupd.f cpp -traditional -P ssconv.f > _ssconv.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o ssconv.o _ssconv.f cpp -traditional -P sseigt.f > _sseigt.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o sseigt.o _sseigt.f cpp -traditional -P ssesrt.f > _ssesrt.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o ssesrt.o _ssesrt.f cpp -traditional -P sseupd.f > _sseupd.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o sseupd.o _sseupd.f cpp -traditional -P ssgets.f > _ssgets.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o ssgets.o _ssgets.f cpp -traditional -P ssortc.f > _ssortc.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o ssortc.o _ssortc.f cpp -traditional -P ssortr.f > _ssortr.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o ssortr.o _ssortr.f cpp -traditional -P sstatn.f > _sstatn.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o sstatn.o _sstatn.f cpp -traditional -P sstats.f > _sstats.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o sstats.o _sstats.f cpp -traditional -P sstqrb.f > _sstqrb.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -o sstqrb.o _sstqrb.f ar rv arpack.a ivout.o dvout.o dgetv0.o dlaqrb.o dnaitr.o dnapps.o dnaup2.o dnaupd.o dnconv.o dneigh.o dmout.o dneupd.o dngets.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o svout.o sgetv0.o slaqrb.o snaitr.o snapps.o snaup2.o snaupd.o snconv.o sneigh.o smout.o sneupd.o sngets.o ssaitr.o ssapps.o ssaup2.o ssaupd.o ssconv.o sseigt.o ssesrt.o sseupd.o ssgets.o ssortc.o ssortr.o sstatn.o sstats.o sstqrb.o a - ivout.o a - dvout.o a - dgetv0.o a - dlaqrb.o a - dnaitr.o a - dnapps.o a - dnaup2.o a - dnaupd.o a - dnconv.o a - dneigh.o a - dmout.o a - dneupd.o a - dngets.o a - dsaitr.o a - dsapps.o a - dsaup2.o a - dsaupd.o a - dsconv.o a - dseigt.o a - dsesrt.o a - dseupd.o a - dsgets.o a - dsortc.o a - dsortr.o a - dstatn.o a - dstats.o a - dstqrb.o a - svout.o a - sgetv0.o a - slaqrb.o a - snaitr.o a - snapps.o a - snaup2.o a - snaupd.o a - snconv.o a - sneigh.o a - smout.o a - sneupd.o a - sngets.o a - ssaitr.o a - ssapps.o a - ssaup2.o a - ssaupd.o a - ssconv.o a - sseigt.o a - ssesrt.o a - sseupd.o a - ssgets.o a - ssortc.o a - ssortr.o a - sstatn.o a - sstats.o a - sstqrb.o ranlib arpack.a make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/arpack' cd ../blas; make make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/blas' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' ar rv blas.a dummy.o r - dummy.o ranlib blas.a make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/blas' cd ../lib ; make sys.a make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `sys.a' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' cd pdb; make make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/ptraj/pdb' icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o pdbrun.o pdbrun.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o pdb_read.o pdb_read.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o pdb_sprntf.o pdb_sprntf.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o pdb_sscanf.o pdb_sscanf.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o pdb_write.o pdb_write.c icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o ms.o ms.c ar rv libpdb.a pdbrun.o pdb_read.o pdb_sprntf.o pdb_sscanf.o pdb_write.o ms.o a - pdbrun.o a - pdb_read.o a - pdb_sprntf.o a - pdb_sscanf.o a - pdb_write.o a - ms.o ranlib libpdb.a make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/ptraj/pdb' ifort -ldl -nofor_main -FR -o rdparm main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o pdb/libpdb.a ../arpack/arpack.a ../lapack/lapack.a ../blas/blas.a ../lib/sys.a -lscs ifort -ldl -nofor_main -FR -o ptraj main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o pdb/libpdb.a ../arpack/arpack.a ../lapack/lapack.a ../blas/blas.a ../lib/sys.a -lscs /bin/mv rdparm ptraj ../../exe make[1]: Leaving directory `/pludisk1/oth/amber/amber9/src/ptraj' cd nmr_aux; make install make[1]: Entering directory `/pludisk1/oth/amber/amber9/src/nmr_aux' cd prepare_input; make clean ; make install make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/nmr_aux/prepare_input' /bin/rm *.o _*.f makeDIST_RST makeANG_RST makeSHF.cp makeCHIR_RST.cp \ makeDIP_RST.protein.cp makeDIP_RST.dna.cp /bin/rm: cannot lstat `*.o': No such file or directory /bin/rm: cannot lstat `_*.f': No such file or directory /bin/rm: cannot lstat `makeDIST_RST': No such file or directory /bin/rm: cannot lstat `makeANG_RST': No such file or directory /bin/rm: cannot lstat `makeSHF.cp': No such file or directory /bin/rm: cannot lstat `makeCHIR_RST.cp': No such file or directory /bin/rm: cannot lstat `makeDIP_RST.protein.cp': No such file or directory /bin/rm: cannot lstat `makeDIP_RST.dna.cp': No such file or directory make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/nmr_aux/prepare_input' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/nmr_aux/prepare_input' icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o makeDIST_RST.o makeDIST_RST.c makeDIST_RST.c(338): warning #266: function declared implicitly if ( !lookuprtyp(atma.rnum,atma.nrtyp) || ^ makeDIST_RST.c(345): warning #266: function declared implicitly if ((mapa=mapdefinition(atma.atyp,atma.rtyp))<0){ ^ makeDIST_RST.c(350): warning #266: function declared implicitly if ((mapb=mapdefinition(atmb.atyp,atmb.rtyp))<0){ ^ makeDIST_RST.c(362): warning #266: function declared implicitly if ((j=lookupanum(residue,atma.newatyp[i]))<0) { ^ makeDIST_RST.c(377): warning #266: function declared implicitly if ((j=lookupanum(residue,atmb.newatyp[i]))<0) { ^ makeDIST_RST.c(409): warning #266: function declared implicitly if ((mapa=mapdefinition(atma.atyp,atma.rtyp))<0){ ^ makeDIST_RST.c(414): warning #266: function declared implicitly if ((mapb=mapdefinition(atmb.atyp,atmb.rtyp))<0){ ^ makeDIST_RST.c(435): warning #880: omission of explicit type is nonstandard ("int" assumed) lookupanum( int rnum, char *atyp ) ^ makeDIST_RST.c(446): warning #880: omission of explicit type is nonstandard ("int" assumed) lookuprtyp( int rnum, char *rtyp ) ^ makeDIST_RST.c(465): warning #880: omission of explicit type is nonstandard ("int" assumed) mapdefinition( char *atyp, char *rtyp ) ^ makeDIST_RST.c(586): warning #880: omission of explicit type is nonstandard ("int" assumed) read_data( FILE *fp, char *data, char *comment ) ^ makeDIST_RST.c(628): warning #880: omission of explicit type is nonstandard ("int" assumed) read_pdb_file( FILE *fp ) ^ makeDIST_RST.c(687): warning #880: omission of explicit type is nonstandard ("int" assumed) read_maplib( FILE *fp ) ^ makeDIST_RST.c(711): warning #266: function declared implicitly nw=split(line,word); ^ makeDIST_RST.c(731): warning #266: function declared implicitly nw=split(line,word); ^ makeDIST_RST.c(749): warning #266: function declared implicitly nw=split(line,word); ^ makeDIST_RST.c(806): warning #880: omission of explicit type is nonstandard ("int" assumed) split( char *str, char wordptr[][WORDSIZE] ) ^ makeDIST_RST.c(922): warning #181: argument is incompatible with corresponding format string conversion sscanf(argv[i],"%d",imix); ^ icc -o makeDIST_RST makeDIST_RST.o -lm icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o makeANG_RST.o makeANG_RST.c makeANG_RST.c(289): warning #266: function declared implicitly if ( tors = make_RST_restraint( torcnt, rnum, rname, angname, lb, ub ) ) ^ makeANG_RST.c(371): warning #266: function declared implicitly ndef = read_lib(); ^ makeANG_RST.c(376): warning #266: function declared implicitly ndef = read_lib(); ^ makeANG_RST.c(384): warning #266: function declared implicitly make_atom_table(pdb); ^ makeANG_RST.c(399): warning #880: omission of explicit type is nonstandard ("int" assumed) make_atom_table(pdb) ^ makeANG_RST.c(453): warning #266: function declared implicitly tdef->R[i] = residue_offset( A[i], tdef->A[i] ); ^ makeANG_RST.c(527): warning #880: omission of explicit type is nonstandard ("int" assumed) make_RST_restraint( tnum, rnum, rname, angname, lb, ub ) ^ icc -o makeANG_RST makeANG_RST.o -lm /bin/rm -f makeSHF_RST.cp makeCHIR_RST.cp makeDIP_RST.protein.cp \ makeDIP_RST.dna.cp cp makeSHF_RST makeSHF_RST.cp cp makeCHIR_RST makeCHIR_RST.cp cp makeDIP_RST.protein makeDIP_RST.protein.cp cp makeDIP_RST.dna makeDIP_RST.dna.cp chmod 755 makeDIST_RST makeANG_RST makeSHF_RST.cp makeCHIR_RST.cp \ makeDIP_RST.protein.cp makeDIP_RST.dna.cp mv makeDIST_RST makeANG_RST ../../../exe mv makeCHIR_RST.cp ../../../exe/makeCHIR_RST mv makeSHF_RST.cp ../../../exe/makeSHF_RST mv makeDIP_RST.protein.cp ../../../exe/makeDIP_RST.protein mv makeDIP_RST.dna.cp ../../../exe/makeDIP_RST.dna cp map.DG-AMBER ../../../dat cp map.Brook-AMBER ../../../dat make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/nmr_aux/prepare_input' cd fantasian; make clean ; make install make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/nmr_aux/fantasian' /bin/rm *.o _*.f fantasian /bin/rm: cannot lstat `*.o': No such file or directory /bin/rm: cannot lstat `_*.f': No such file or directory /bin/rm: cannot lstat `fantasian': No such file or directory make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/nmr_aux/fantasian' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/nmr_aux/fantasian' cpp -traditional -P fantasian.f > _fantasian.f ifort -ldl -c -w95 -ftz -O2 -o fantasian.o _fantasian.f ifort -ldl -o fantasian fantasian.o ../../lib/random.o ../../lib/mexit.o -lscs mv fantasian ../../../exe/ make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/nmr_aux/fantasian' cp senergy sviol sviol2 ../../exe make[1]: Leaving directory `/pludisk1/oth/amber/amber9/src/nmr_aux' cd nmode; make install make[1]: Entering directory `/pludisk1/oth/amber/amber9/src/nmode' cpp -traditional -P nmode.f > _nmode.f ifort -ldl -c -w95 -ftz -O2 -FR -o nmode.o _nmode.f cpp -traditional -P alloc.f > _alloc.f ifort -ldl -c -w95 -ftz -O2 -FR -o alloc.o _alloc.f cpp -traditional -P angl.f > _angl.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -FR -o angl.o _angl.f cpp -traditional -P assert.f > _assert.f ifort -ldl -c -w95 -ftz -O2 -FR -o assert.o _assert.f cpp -traditional -P bond.f > _bond.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -FR -o bond.o _bond.f cpp -traditional -P bresna.f > _bresna.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -FR -o bresna.o _bresna.f cpp -traditional -P cdiv.f > _cdiv.f ifort -ldl -c -w95 -ftz -O2 -FR -o cdiv.o _cdiv.f cpp -traditional -P chck.f > _chck.f ifort -ldl -c -w95 -ftz -O2 -FR -o chck.o _chck.f cpp -traditional -P chdir.f > _chdir.f ifort -ldl -c -w95 -ftz -O2 -FR -o chdir.o _chdir.f cpp -traditional -P chlamba.f > _chlamba.f ifort -ldl -c -w95 -ftz -O2 -FR -o chlamba.o _chlamba.f cpp -traditional -P debug.f > _debug.f ifort -ldl -c -w95 -ftz -O2 -FR -o debug.o _debug.f cpp -traditional -P difang.f > _difang.f ifort -ldl -c -w95 -ftz -O2 -FR -o difang.o _difang.f cpp -traditional -P difbon.f > _difbon.f ifort -ldl -c -w95 -ftz -O2 -FR -o difbon.o _difbon.f cpp -traditional -P dihdup.f > _dihdup.f ifort -ldl -c -w95 -ftz -O2 -FR -o dihdup.o _dihdup.f cpp -traditional -P dihed.f > _dihed.f ifort -ldl -c -w95 -ftz -O2 -FR -o dihed.o _dihed.f cpp -traditional -P dirch.f > _dirch.f ifort -ldl -c -w95 -ftz -O2 -FR -o dirch.o _dirch.f cpp -traditional -P dsort.f > _dsort.f ifort -ldl -c -w95 -ftz -O2 -FR -o dsort.o _dsort.f cpp -traditional -P eigout.f > _eigout.f ifort -ldl -c -w95 -ftz -O2 -FR -o eigout.o _eigout.f cpp -traditional -P ephi.f > _ephi.f ifort -ldl -c -w95 -ftz -O2 -FR -o ephi.o _ephi.f cpp -traditional -P eprnt.f > _eprnt.f ifort -ldl -c -w95 -ftz -O2 -FR -o eprnt.o _eprnt.f cpp -traditional -P errstp.f > _errstp.f ifort -ldl -c -w95 -ftz -O2 -FR -o errstp.o _errstp.f cpp -traditional -P findl.f > _findl.f ifort -ldl -c -w95 -ftz -O2 -FR -o findl.o _findl.f cpp -traditional -P forces.f > _forces.f ifort -ldl -c -w95 -ftz -O2 -FR -o forces.o _forces.f cpp -traditional -P getcor.f > _getcor.f ifort -ldl -c -w95 -ftz -O2 -FR -o getcor.o _getcor.f cpp -traditional -P getf.f > _getf.f ifort -ldl -c -w95 -ftz -O2 -FR -o getf.o _getf.f cpp -traditional -P getm.f > _getm.f ifort -ldl -c -w95 -ftz -O2 -FR -o getm.o _getm.f cpp -traditional -P getref.f > _getref.f ifort -ldl -c -w95 -ftz -O2 -FR -o getref.o _getref.f cpp -traditional -P grdmax.f > _grdmax.f ifort -ldl -c -w95 -ftz -O2 -FR -o grdmax.o _grdmax.f cpp -traditional -P level.f > _level.f ifort -ldl -c -w95 -ftz -O2 -FR -o level.o _level.f cpp -traditional -P lmdout.f > _lmdout.f ifort -ldl -c -w95 -ftz -O2 -FR -o lmdout.o _lmdout.f cpp -traditional -P lmode.f > _lmode.f ifort -ldl -c -w95 -ftz -O2 -FR -o lmode.o _lmode.f cpp -traditional -P makel.f > _makel.f ifort -ldl -c -w95 -ftz -O2 -FR -o makel.o _makel.f cpp -traditional -P movecm.f > _movecm.f ifort -ldl -c -w95 -ftz -O2 -FR -o movecm.o _movecm.f cpp -traditional -P mweight.f > _mweight.f ifort -ldl -c -w95 -ftz -O2 -FR -o mweight.o _mweight.f cpp -traditional -P mweit.f > _mweit.f ifort -ldl -c -w95 -ftz -O2 -FR -o mweit.o _mweit.f cpp -traditional -P new_stuff.f > _new_stuff.f ifort -ldl -c -w95 -ftz -O2 -FR -o new_stuff.o _new_stuff.f cpp -traditional -P nmdfil.f > _nmdfil.f ifort -ldl -c -w95 -ftz -O2 -FR -o nmdfil.o _nmdfil.f cpp -traditional -P nonbon.f > _nonbon.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -FR -o nonbon.o _nonbon.f cpp -traditional -P nonbon1.f > _nonbon1.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -FR -o nonbon1.o _nonbon1.f cpp -traditional -P norm.f > _norm.f ifort -ldl -c -w95 -ftz -O2 -FR -o norm.o _norm.f cpp -traditional -P norml.f > _norml.f ifort -ldl -c -w95 -ftz -O2 -FR -o norml.o _norml.f cpp -traditional -P nrch.f > _nrch.f ifort -ldl -c -w95 -ftz -O2 -FR -o nrch.o _nrch.f cpp -traditional -P oseen.f > _oseen.f ifort -ldl -c -w95 -ftz -O2 -FR -o oseen.o _oseen.f cpp -traditional -P pairr.f > _pairr.f ifort -ldl -c -w95 -ftz -O2 -FR -o pairr.o _pairr.f cpp -traditional -P pairw.f > _pairw.f ifort -ldl -c -w95 -ftz -O2 -FR -o pairw.o _pairw.f cpp -traditional -P percon.f > _percon.f ifort -ldl -c -w95 -ftz -O2 -FR -o percon.o _percon.f cpp -traditional -P pload.f > _pload.f ifort -ldl -c -w95 -ftz -O2 -FR -o pload.o _pload.f cpp -traditional -P putvar.f > _putvar.f ifort -ldl -c -w95 -ftz -O2 -FR -o putvar.o _putvar.f cpp -traditional -P rdinp.f > _rdinp.f ifort -ldl -c -w95 -ftz -O2 -FR -o rdinp.o _rdinp.f cpp -traditional -P rdparm.f > _rdparm.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -FR -o rdparm.o _rdparm.f cpp -traditional -P remrot.f > _remrot.f ifort -ldl -c -w95 -ftz -O2 -FR -o remrot.o _remrot.f cpp -traditional -P resdis.f > _resdis.f ifort -ldl -c -w95 -ftz -O3 -IPF_fma -IPF_fp_relaxed -ip -FR -o resdis.o _resdis.f cpp -traditional -P savec.f > _savec.f ifort -ldl -c -w95 -ftz -O2 -FR -o savec.o _savec.f cpp -traditional -P savei.f > _savei.f ifort -ldl -c -w95 -ftz -O2 -FR -o savei.o _savei.f cpp -traditional -P savet.f > _savet.f ifort -ldl -c -w95 -ftz -O2 -FR -o savet.o _savet.f cpp -traditional -P setang.f > _setang.f ifort -ldl -c -w95 -ftz -O2 -FR -o setang.o _setang.f cpp -traditional -P setatm.f > _setatm.f ifort -ldl -c -w95 -ftz -O2 -FR -o setatm.o _setatm.f cpp -traditional -P setbon.f > _setbon.f ifort -ldl -c -w95 -ftz -O2 -FR -o setbon.o _setbon.f cpp -traditional -P setcor.f > _setcor.f ifort -ldl -c -w95 -ftz -O2 -FR -o setcor.o _setcor.f cpp -traditional -P setdih.f > _setdih.f ifort -ldl -c -w95 -ftz -O2 -FR -o setdih.o _setdih.f cpp -traditional -P setgam.f > _setgam.f ifort -ldl -c -w95 -ftz -O2 -FR -o setgam.o _setgam.f cpp -traditional -P setgr.f > _setgr.f ifort -ldl -c -w95 -ftz -O2 -FR -o setgr.o _setgr.f cpp -traditional -P setvar.f > _setvar.f ifort -ldl -c -w95 -ftz -O2 -FR -o setvar.o _setvar.f cpp -traditional -P spsort.f > _spsort.f ifort -ldl -c -w95 -ftz -O2 -FR -o spsort.o _spsort.f cpp -traditional -P thermo.f > _thermo.f ifort -ldl -c -w95 -ftz -O2 -FR -o thermo.o _thermo.f cpp -traditional -P timit.f > _timit.f ifort -ldl -c -w95 -ftz -O2 -FR -o timit.o _timit.f cpp -traditional -P traco.f > _traco.f ifort -ldl -c -w95 -ftz -O2 -FR -o traco.o _traco.f cpp -traditional -P tsearch.f > _tsearch.f ifort -ldl -c -w95 -ftz -O2 -FR -o tsearch.o _tsearch.f cpp -traditional -P tstate.f > _tstate.f ifort -ldl -c -w95 -ftz -O2 -FR -o tstate.o _tstate.f cpp -traditional -P xconst.f > _xconst.f ifort -ldl -c -w95 -ftz -O2 -FR -o xconst.o _xconst.f cpp -traditional -P zerout.f > _zerout.f ifort -ldl -c -w95 -ftz -O2 -FR -o zerout.o _zerout.f cpp -traditional -P zxcgr.f > _zxcgr.f ifort -ldl -c -w95 -ftz -O2 -FR -o zxcgr.o _zxcgr.f cpp -traditional -P mexit.f > _mexit.f ifort -ldl -c -w95 -ftz -O2 -FR -o mexit.o _mexit.f cd ../lib ; ./Makelist ../lib/rfree.o ../lib/matinv.o ../lib/nxtsec.o ../lib/amopen.o ../lib/rgroup.o make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' cpp -traditional -P rfree.f > _rfree.f ifort -ldl -c -w95 -ftz -O2 -o rfree.o _rfree.f make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' cpp -traditional -P matinv.f > _matinv.f ifort -ldl -c -w95 -ftz -O2 -o matinv.o _matinv.f make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' cpp -traditional -P amopen.f > _amopen.f ifort -ldl -c -w95 -ftz -O2 -o amopen.o _amopen.f make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' cpp -traditional -P rgroup.f > _rgroup.f ifort -ldl -c -w95 -ftz -O2 -o rgroup.o _rgroup.f make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' cd ../lib; make sys.a make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `sys.a' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' cd ../lapack; make make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lapack' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' ar rv lapack.a xerbla.o r - xerbla.o ranlib lapack.a make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lapack' cd ../blas; make make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/blas' Makefile:7: warning: overriding commands for target `.f.o' ../config.h:82: warning: ignoring old commands for target `.f.o' ar rv blas.a dummy.o r - dummy.o ranlib blas.a make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/blas' ifort -ldl -FR -o nmode nmode.o alloc.o angl.o assert.o bond.o bresna.o cdiv.o chck.o chdir.o chlamba.o debug.o difang.o difbon.o dihdup.o dihed.o dirch.o dsort.o eigout.o ephi.o eprnt.o errstp.o findl.o forces.o getcor.o getf.o getm.o getref.o grdmax.o level.o lmdout.o lmode.o makel.o movecm.o mweight.o mweit.o new_stuff.o nmdfil.o nonbon.o nonbon1.o norm.o norml.o nrch.o oseen.o pairr.o pairw.o percon.o pload.o putvar.o rdinp.o rdparm.o remrot.o resdis.o savec.o savei.o savet.o setang.o setatm.o setbon.o setcor.o setdih.o setgam.o setgr.o setvar.o spsort.o thermo.o timit.o traco.o tsearch.o tstate.o xconst.o zerout.o zxcgr.o mexit.o ../lib/rfree.o ../lib/matinv.o ../lib/nxtsec.o ../lib/amopen.o ../lib/rgroup.o \ ../lib/sys.a ../lapack/lapack.a ../blas/blas.a -lscs /bin/mv nmode ../../exe make[1]: Leaving directory `/pludisk1/oth/amber/amber9/src/nmode' cd resp; make install make[1]: Entering directory `/pludisk1/oth/amber/amber9/src/resp' cpp -traditional -P resp.f > _resp.f ifort -ldl -c -w95 -ftz -O2 -o resp.o _resp.f cd ../lib ; ./Makelist ../lib/mexit.o ../lib/amopen.o ../lib/lapack.o make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `mexit.o' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `amopen.o' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' cpp -traditional -P lapack.f > _lapack.f ifort -ldl -c -w95 -ftz -O2 -o lapack.o _lapack.f make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' cd ../lib ; make sys.a make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `sys.a' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' ifort -ldl -o resp resp.o ../lib/mexit.o ../lib/amopen.o ../lib/lapack.o ../lib/sys.a -lscs /bin/mv resp ../../exe/ make[1]: Leaving directory `/pludisk1/oth/amber/amber9/src/resp' cd protonate; make install make[1]: Entering directory `/pludisk1/oth/amber/amber9/src/protonate' cpp -traditional -P pol_h.f > _pol_h.f ifort -ldl -c -w95 -ftz -O2 -o pol_h.o _pol_h.f cpp -traditional -P stm_sel.f > _stm_sel.f ifort -ldl -c -w95 -ftz -O2 -o stm_sel.o _stm_sel.f cpp -traditional -P sortf_as.f > _sortf_as.f ifort -ldl -c -w95 -ftz -O2 -o sortf_as.o _sortf_as.f cd ../lib ; ./Makelist ../lib/mexit.o ../lib/amopen.o make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `mexit.o' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `amopen.o' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' cd ../lib; make sys.a make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `sys.a' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' ifort -ldl -o pol_h pol_h.o stm_sel.o sortf_as.o ../lib/mexit.o ../lib/amopen.o ../lib/sys.a -lscs cpp -traditional -P protonate.f > _protonate.f ifort -ldl -c -w95 -ftz -O2 -o protonate.o _protonate.f ifort -ldl -o protonate protonate.o ../lib/mexit.o ../lib/amopen.o ../lib/sys.a -lscs cpp -traditional -P gwh.f > _gwh.f ifort -ldl -c -w95 -ftz -O2 -o gwh.o _gwh.f cpp -traditional -P pdbatm.f > _pdbatm.f ifort -ldl -c -w95 -ftz -O2 -o pdbatm.o _pdbatm.f cpp -traditional -P pdbhet2.f > _pdbhet2.f ifort -ldl -c -w95 -ftz -O2 -o pdbhet2.o _pdbhet2.f cpp -traditional -P top_3.f > _top_3.f ifort -ldl -c -w95 -ftz -O2 -o top_3.o _top_3.f ifort -ldl -o gwh gwh.o pdbatm.o pdbhet2.o top_3.o stm_sel.o sortf_as.o ../lib/mexit.o ../lib/amopen.o ../lib/sys.a -lscs mv pol_h protonate gwh ../../exe/ make[1]: Leaving directory `/pludisk1/oth/amber/amber9/src/protonate' cd anal; make install make[1]: Entering directory `/pludisk1/oth/amber/amber9/src/anal' cpp -traditional -P anafil.f > _anafil.f ifort -ldl -c -w95 -ftz -O2 -o anafil.o _anafil.f cpp -traditional -P analgr.f > _analgr.f ifort -ldl -c -w95 -ftz -O2 -o analgr.o _analgr.f cpp -traditional -P analys.f > _analys.f ifort -ldl -c -w95 -ftz -O2 -o analys.o _analys.f cpp -traditional -P angl.f > _angl.f ifort -ldl -c -w95 -ftz -O2 -o angl.o _angl.f cpp -traditional -P anglp.f > _anglp.f ifort -ldl -c -w95 -ftz -O2 -o anglp.o _anglp.f cpp -traditional -P bangle.f > _bangle.f ifort -ldl -c -w95 -ftz -O2 -o bangle.o _bangle.f cpp -traditional -P bond.f > _bond.f ifort -ldl -c -w95 -ftz -O2 -o bond.o _bond.f cpp -traditional -P calhb.f > _calhb.f ifort -ldl -c -w95 -ftz -O2 -o calhb.o _calhb.f cpp -traditional -P chain.f > _chain.f ifort -ldl -c -w95 -ftz -O2 -o chain.o _chain.f cpp -traditional -P clear.f > _clear.f ifort -ldl -c -w95 -ftz -O2 -o clear.o _clear.f cpp -traditional -P compact.f > _compact.f ifort -ldl -c -w95 -ftz -O2 -o compact.o _compact.f cpp -traditional -P dist.f > _dist.f ifort -ldl -c -w95 -ftz -O2 -o dist.o _dist.f cpp -traditional -P egout.f > _egout.f ifort -ldl -c -w95 -ftz -O2 -o egout.o _egout.f cpp -traditional -P ephi.f > _ephi.f ifort -ldl -c -w95 -ftz -O2 -o ephi.o _ephi.f cpp -traditional -P gaus80.f > _gaus80.f ifort -ldl -c -w95 -ftz -O2 -o gaus80.o _gaus80.f cpp -traditional -P gauss.f > _gauss.f ifort -ldl -c -w95 -ftz -O2 -o gauss.o _gauss.f cpp -traditional -P getall.f > _getall.f ifort -ldl -c -w95 -ftz -O2 -o getall.o _getall.f cpp -traditional -P getcmn.f > _getcmn.f ifort -ldl -c -w95 -ftz -O2 -o getcmn.o _getcmn.f cpp -traditional -P hangl.f > _hangl.f ifort -ldl -c -w95 -ftz -O2 -o hangl.o _hangl.f cpp -traditional -P haxis.f > _haxis.f ifort -ldl -c -w95 -ftz -O2 -o haxis.o _haxis.f cpp -traditional -P hbond.f > _hbond.f ifort -ldl -c -w95 -ftz -O2 -o hbond.o _hbond.f cpp -traditional -P hbout.f > _hbout.f ifort -ldl -c -w95 -ftz -O2 -o hbout.o _hbout.f cpp -traditional -P locmem.f > _locmem.f ifort -ldl -c -w95 -ftz -O2 -o locmem.o _locmem.f cpp -traditional -P lsqstr.f > _lsqstr.f ifort -ldl -c -w95 -ftz -O2 -o lsqstr.o _lsqstr.f cpp -traditional -P matind.f > _matind.f ifort -ldl -c -w95 -ftz -O2 -o matind.o _matind.f cpp -traditional -P mdbox.f > _mdbox.f ifort -ldl -c -w95 -ftz -O2 -o mdbox.o _mdbox.f cpp -traditional -P mdread.f > _mdread.f ifort -ldl -c -w95 -ftz -O2 -o mdread.o _mdread.f cpp -traditional -P minv.f > _minv.f ifort -ldl -c -w95 -ftz -O2 -o minv.o _minv.f cpp -traditional -P movecm.f > _movecm.f ifort -ldl -c -w95 -ftz -O2 -o movecm.o _movecm.f cpp -traditional -P nhbpar.f > _nhbpar.f ifort -ldl -c -w95 -ftz -O2 -o nhbpar.o _nhbpar.f cpp -traditional -P pdbout.f > _pdbout.f ifort -ldl -c -w95 -ftz -O2 -o pdbout.o _pdbout.f cpp -traditional -P pdbrit.f > _pdbrit.f ifort -ldl -c -w95 -ftz -O2 -o pdbrit.o _pdbrit.f cpp -traditional -P percon.f > _percon.f ifort -ldl -c -w95 -ftz -O2 -o percon.o _percon.f cpp -traditional -P prtri.f > _prtri.f ifort -ldl -c -w95 -ftz -O2 -o prtri.o _prtri.f cpp -traditional -P prtrin.f > _prtrin.f ifort -ldl -c -w95 -ftz -O2 -o prtrin.o _prtrin.f cpp -traditional -P puck.f > _puck.f ifort -ldl -c -w95 -ftz -O2 -o puck.o _puck.f cpp -traditional -P radgy.f > _radgy.f ifort -ldl -c -w95 -ftz -O2 -o radgy.o _radgy.f cpp -traditional -P rdparm.f > _rdparm.f ifort -ldl -c -w95 -ftz -O2 -o rdparm.o _rdparm.f cpp -traditional -P rdrest.f > _rdrest.f ifort -ldl -c -w95 -ftz -O2 -o rdrest.o _rdrest.f cpp -traditional -P resdis.f > _resdis.f ifort -ldl -c -w95 -ftz -O2 -o resdis.o _resdis.f cpp -traditional -P resnbn.f > _resnbn.f ifort -ldl -c -w95 -ftz -O2 -o resnbn.o _resnbn.f cpp -traditional -P resnbp.f > _resnbp.f ifort -ldl -c -w95 -ftz -O2 -o resnbp.o _resnbp.f cpp -traditional -P rms.f > _rms.f ifort -ldl -c -w95 -ftz -O2 -o rms.o _rms.f cpp -traditional -P rmsfit.f > _rmsfit.f ifort -ldl -c -w95 -ftz -O2 -o rmsfit.o _rmsfit.f cpp -traditional -P rmsmov.f > _rmsmov.f ifort -ldl -c -w95 -ftz -O2 -o rmsmov.o _rmsmov.f cpp -traditional -P stell.f > _stell.f ifort -ldl -c -w95 -ftz -O2 -o stell.o _stell.f cpp -traditional -P stogrd.f > _stogrd.f ifort -ldl -c -w95 -ftz -O2 -o stogrd.o _stogrd.f cpp -traditional -P sumgrp.f > _sumgrp.f ifort -ldl -c -w95 -ftz -O2 -o sumgrp.o _sumgrp.f cpp -traditional -P tell.f > _tell.f ifort -ldl -c -w95 -ftz -O2 -o tell.o _tell.f cpp -traditional -P tilang.f > _tilang.f ifort -ldl -c -w95 -ftz -O2 -o tilang.o _tilang.f cpp -traditional -P tilt.f > _tilt.f ifort -ldl -c -w95 -ftz -O2 -o tilt.o _tilt.f cpp -traditional -P tors.f > _tors.f ifort -ldl -c -w95 -ftz -O2 -o tors.o _tors.f cpp -traditional -P traco.f > _traco.f ifort -ldl -c -w95 -ftz -O2 -o traco.o _traco.f cpp -traditional -P vect.f > _vect.f ifort -ldl -c -w95 -ftz -O2 -o vect.o _vect.f cpp -traditional -P volume.f > _volume.f ifort -ldl -c -w95 -ftz -O2 -o volume.o _volume.f cpp -traditional -P xconst.f > _xconst.f ifort -ldl -c -w95 -ftz -O2 -o xconst.o _xconst.f cd ../lib ; ./Makelist ../lib/rfree.o ../lib/rgroup.o ../lib/nxtsec.o ../lib/util.o ../lib/amopen.o ../lib/mexit.o ../lib/ligenb.o make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `rfree.o' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `rgroup.o' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `nxtsec.o' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' cpp -traditional -P util.f > _util.f ifort -ldl -c -w95 -ftz -O2 -o util.o _util.f make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `amopen.o' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `mexit.o' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' cpp -traditional -P ligenb.f > _ligenb.f ifort -ldl -c -w95 -ftz -O2 -o ligenb.o _ligenb.f make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' cd ../lib; make sys.a make[2]: Entering directory `/pludisk1/oth/amber/amber9/src/lib' make[2]: `sys.a' is up to date. make[2]: Leaving directory `/pludisk1/oth/amber/amber9/src/lib' ifort -ldl -o anal anafil.o analgr.o analys.o angl.o anglp.o bangle.o bond.o calhb.o chain.o clear.o compact.o dist.o egout.o ephi.o gaus80.o gauss.o getall.o getcmn.o hangl.o haxis.o hbond.o hbout.o locmem.o lsqstr.o matind.o mdbox.o mdread.o minv.o movecm.o nhbpar.o pdbout.o pdbrit.o percon.o prtri.o prtrin.o puck.o radgy.o rdparm.o rdrest.o resdis.o resnbn.o resnbp.o rms.o rmsfit.o rmsmov.o stell.o stogrd.o sumgrp.o tell.o tilang.o tilt.o tors.o traco.o vect.o volume.o xconst.o ../lib/rfree.o ../lib/rgroup.o ../lib/nxtsec.o ../lib/util.o ../lib/amopen.o ../lib/mexit.o ../lib/ligenb.o ../lib/sys.a -lscs /bin/mv anal ../../exe/ make[1]: Leaving directory `/pludisk1/oth/amber/amber9/src/anal' cd mm_pbsa; make install make[1]: Entering directory `/pludisk1/oth/amber/amber9/src/mm_pbsa' cpp -traditional -P make_crd_hg.f > _make_crd_hg.f ifort -ldl -c -w95 -ftz -O2 -o make_crd_hg.o _make_crd_hg.f ifort -ldl -o make_crd_hg make_crd_hg.o ../lib/amopen.o ../lib/mexit.o -lscs icc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -o molsurf.o molsurf.c molsurf.c(98): warning #266: function declared implicitly nat = readpqr (pqrfile); ^ molsurf.c(560): warning #181: argument is incompatible with corresponding format string conversion printf ("Sum total %ld\n\n", total); ^ molsurf.c(2333): warning #1193: standard requires that parameter "resnum" be given a type by a subsequent declaration ("int" assumed) p1, p2, center, zaxis, resnum) ^ molsurf.c(6007): warning #175: subscript out of range xvertex[4].vert_index = (*nverts) - 1; ^ molsurf.c(6012): warning #175: subscript out of range xvertex[4].vert_index = (*nverts) - 1; ^ molsurf.c(7919): warning #1193: standard requires that parameter "dir1" be given a type by a subsequent declaration ("int" assumed) static REAL_T interior_angle (e1, dir1, e2, dir2, concave_edge, circle, vertex) ^ molsurf.c(7919): warning #1193: standard requires that parameter "dir2" be given a type by a subsequent declaration ("int" assumed) static REAL_T interior_angle (e1, dir1, e2, dir2, concave_edge, circle, vertex) ^