AMBER Archive (2006)

Subject: Re: AMBER: tree name generated by tleap is different from the input PREP parameter file

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Fri Dec 29 2006 - 21:00:26 CST

> how does the tleap change the tree name after loading the PREP parameter
> file?

It discards the tree info and when doing saveamberparm it develops
new tree types for each residue that has connect0 and connect1 atoms
designated. The only really predictable thing about the new types is
that the 'M' (main chain) atoms are on a shortest path between connect0
and connect1.

Bill
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu