AMBER Archive (2006)

Subject: Re: AMBER: Renumber residues in LEAP

From: David A. Case (
Date: Mon Dec 25 2006 - 16:11:34 CST

On Tue, Dec 19, 2006, Akshay Patny wrote:

> I am curious, is there a way in LEAP to renumber all
> residues from 1- let's say 10,000 ---- To ----- like
> 24-10,024? How can I do that? I want my residue numbers of
> protein correct as later when I look into the output from
> simulation, it will create a confusion with residue numbers.

This is a common problem, but (as of yet) not one that Amber is well-equipped
to solve. People generally write their own scripts to re-number Amber-created
pdb files in the way they wish.


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