AMBER Archive (2006)

Subject: Re: AMBER: Parallelization method

From: Robert Duke (rduke_at_email.unc.edu)
Date: Tue Dec 19 2006 - 12:29:09 CST

Jordi -
I should be putting out a paper on pmemd in the next few months. - Regards -
Bob Duke

----- Original Message -----
From: "Jordi Camps" <jcamps_at_lsi.upc.edu>
To: <amber_at_scripps.edu>
Sent: Tuesday, December 19, 2006 1:19 PM
Subject: AMBER: Parallelization method

> Hello,
>
> I'm looking for information about the way sander/pmemd are parallelized.
> How
> data are distributed, how the algorithm works... Is it described anywhere?
> I've searched in the manual, but it seems to be any chapter talking about
> this subject.
>
> Thank you very much,
>
> --
> Jordi Camps Puchades
> jcamps_at_lsi.upc.edu
> Supercomputing research, support and development
>
> Barcelona Supercomputing Center | Instituto Nacional de Bioinformática
> | GNHC-2 UPC-CIRI
> (http://inb.lsi.upc.edu)
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>
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