AMBER Archive (2006)

Subject: Re: AMBER: Is there a way to simulate a box of pure water with amber

From: Sergey Samsonov (sergeys_at_biotec.tu-dresden.de)
Date: Mon Dec 18 2006 - 01:43:27 CST

Hi Li,

one of the ways to do that is to take pdb file with one water molecule
and then solvate it with water box in xleap.

Best regards,

Sergey

Li Su wrote:
> Hi,
> Sorry to bother. I am wondering if there is a way in amber to
> construct a box of water with no protein for simulation. Thank you in
> advance.
>
>
> Best,
> Li
>
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