AMBER Archive (2006)

Subject: AMBER: Error in sysdepend.c?

From: Shin, John Y CONTRACTOR WRAIR-Wash DC (John.Shin_at_AMEDD.ARMY.MIL)
Date: Fri Dec 15 2006 - 13:44:50 CST

Hi all,

I'm trying to compile Amber 9 on an Octane 2 SGI machine running IRIX
6.5.25f using gcc 4.0.3, binutils 2.17, and g95 0.9. I use the
following commands to compile:

1. ./configure g95
2. make serial

The compilation halts because of the following error:

cd src/leap; make install
make[2]: Entering directory
'/usr/people/jshin/Amber_Files/amber9/src/leap/src/leap'
Makefile:4: warning: overriding commands for target '.c.o'
../../../config.h:86: warning: ignoring old commands for target '.c.o'
gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
-02 -o basics.o basics.c
gcc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE
-02 -o sysdepend.o sysdepend.c
sysdepend.c: In function 'SysdependDirectoryList':
sysdepend.c:177: warning: passing argument 2 of 'BSDscandir' from
incompatible pointer type
sysdepend.c:186: error: dereferencing pointer to incomplete type
make[2]: *** [sysdepend.o] Error 1
make[2]: Leaving directory
'/usr/people/jshin/Amber_Files/amber9/src/leap'
make[1]: *** [install] Error 2
make[1]: Leaving directory
'/usr/people/jshin/Amber_Files/amber9/src/leap'
make: *** [serial] Error 2

Is this a bug inherent in Amber 9?

Much thanks,

John Shin

Walter Reed Army Institute of Research
Division of Molecular Pharmacology
Department of Biochemistry
503 Robert Grant Ave.
Silver Spring, MD 20910
Tel: 301-319-9054
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