AMBER Archive (2006)

Subject: AMBER: ambpdb -pqr

From: Seth Lilavivat (
Date: Tue Nov 28 2006 - 14:52:10 CST

Dear Amber Community,

I am attempting to write a PQR file by using the -pqr flag on ambpdb. However,
when I offer the command I receive an error:

     ambpdb -pqr myfile.prmtop < myfile.inpcrd > newfile.pqr

When I open up "newfile.pqr" it says, "Unknown flag myfile.prmtop".

Thanks for everyone's help,
The AMBER Mail Reflector
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