AMBER Archive (2006)

Subject: Re: AMBER: How to specify user defined force fields or its parameters in amber??

From: Gustavo Seabra (
Date: Tue Nov 28 2006 - 09:18:49 CST

On 11/28/06, Gobind Singh Bisht <> wrote:
> isn't it possible that u make Kr=0 for all the bonds or few bonds in my

For that, all yoou need is to look for the section in the parmtop file with
the header:


and then set the values you want to zero, no programming needed. (Make sure
you don't change the formatting)


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