AMBER Archive (2006)

Subject: Re: AMBER: NTR for implicit solvent? How to defin restrain for two disconnectedsequences?

From: David A. Case (case_at_scripps.edu)
Date: Sat Nov 25 2006 - 02:51:06 CST

On Sat, Nov 25, 2006, a a wrote:
>
> Yes, I tried, but it seems only read the last line, and did not restrainst
> the 0 to 9 residues for me.

Amber generally starts numbering residues at "1", not "0" -- have you played
around with the residue numbers to see what happens? I suspect it is treating
the "0" as some kind of end token.

...dac

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