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AMBER Archive (2006)Subject: Re: AMBER: Ptraj syntax change Amber8->Amber9 ?
From: David A. Case (case_at_scripps.edu)
On Wed, Nov 22, 2006, Markus Kaukonen wrote:
I agree: reading that paragraph always leaves me completely confused. For
a. why are will still referring to SPASMS(!), and why does the "recommended
b. the specification of what is required and what is optional (in the words
c. it is not clear what happens if you leave out the "com <mask>" part.
Here and elsewhere, commented examples would be a real help.
(Note to all: tutorial B5 is a good addition to the manual (having a list of
...regards...dac
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