AMBER Archive (2006)

Subject: Re: AMBER: Problem with mask when using distance in ptraj

From: David A. Case (case_at_scripps.edu)
Date: Wed Nov 22 2006 - 15:07:29 CST

On Wed, Nov 22, 2006, Christopher Gaughan wrote:

> Mask [@CA:244] represents 0 atoms !!!NO ATOMS DETECTED!!!

You can use the ambmask command to play around with various masks to get
what you want. Have you tried ':544_at_CA'? All the examples in the Users'
Manual have the residue specification to the left of the atom specification,
and maybe that is required(?).

....good luck....dac

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