AMBER Archive (2006)

Subject: AMBER: Mutual exclusion of atoms

From: Nitin Bhardwaj (
Date: Sun Nov 05 2006 - 23:59:38 CST

Dear Amber users,

  I have to build a system where I want that a set of atoms should not
"see" atoms from another set ie., they should be mutually excluded. I
know this is done in CHARMM by declaring explicitly, next to the
definition of each atom from one molecule, those atoms of another
molecule with which it should not interact. Is there a way in amber
where I can specify this?

thanks a lot in advance,
Best regards,
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