AMBER Archive (2006)

Subject: Re: AMBER: Amber 9 parallel test fail on 4096wat/Run.column_fft

From: Yu Chen (chen_at_hhmi.umbc.edu)
Date: Wed Nov 01 2006 - 11:02:26 CST

Thanks, David

No, I didn't configure with -bintraj, that's what I thought.
And I will comment out the test and try again.

Best wishes,
Chen

On Nov 1, 2006, at 11:54 AM, David A. Case wrote:

> On Wed, Nov 01, 2006, Yu Chen wrote:
>
>> cd bintraj; ./Run.bintraj
>> sander and ptraj: test sander netCDF output and ptraj netCDF input
>> ---------------------------------------------------------------------
>> ---
>> -----
>> One of the processes started by mpirun has exited with a nonzero exit
>> code.
>
> Did you configure with -bintraj set? If not, this is an expected
> failure.
>
>> make[1]: [test.sander.BASIC] Error 1 (ignored)
>
> Note that the test suite is reported (but ignoring) the fact that
> the bintraj
> failed. If you are expecting to use this option, of course, you
> should take
> account of this.
>
>> v9/test'
>> export TESTsander=/hhmi/software/Amber/v9/exe/sander.MPI; cd
>> 4096wat; ./Run.column_fft
>> ASSERTion 'processor == numtasks' failed in spatial_fft.f at line
>> 488.
>
> I'm cc-ing this to Mike Crowley, but I don't think(?) users
> typically run
> the "column_fft" code anyway. We will look into this test failure,
> but you
> can probably continue on fine (comment out this test case, and try
> again.)
>
> ...good luck..dac
>
> ----------------------------------------------------------------------
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Yu Chen
chen_at_hhmi.umbc.edu
Baltimore, MD 21250

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