AMBER Archive (2006)

Subject: AMBER: Amber 9 parallel test fail on 4096wat/Run.column_fft

From: Yu Chen (chen_at_hhmi.umbc.edu)
Date: Wed Nov 01 2006 - 10:22:54 CST

Hi, I have successfully compiled and installed Amber 9 on our RHEL AS
3 Linux cluster. It passed serial test, but in parallel test, I got
the following errors, hope someone can help me with. Thanks in advance!

First, our configurations:
=================================
RHEL AS 3 on Athlon,
Using LAM 7.0.6 which was compiled with intel compiler version 8.0 of
icc/icpc/ifort
Amber 9 was compiled using the same compilers
DO_PARALLEL set to 'mpirun -np 4'

Second, the error messages:
====================================
...
...
cd bintraj; ./Run.bintraj
sander and ptraj: test sander netCDF output and ptraj netCDF input
------------------------------------------------------------------------
-----
One of the processes started by mpirun has exited with a nonzero exit
code. This typically indicates that the process finished in error.
If your process did not finish in error, be sure to include a "return
0" or "exit(0)" in your C code before exiting the application.

PID 29219 failed on node n1 (10.0.0.8) with exit status 1.
------------------------------------------------------------------------
-----
   ./Run.bintraj: Program error
make[1]: [test.sander.BASIC] Error 1 (ignored)
make[1]: Leaving directory `/raid5/p2/raid1_p12/hhmi/software/Amber/
v9/test'
export TESTsander=/hhmi/software/Amber/v9/exe/sander.MPI; cd
4096wat; ./Run.column_fft
ASSERTion 'processor == numtasks' failed in spatial_fft.f at line
488.
------------------------------------------------------------------------
-----
One of the processes started by mpirun has exited with a nonzero exit
code. This typically indicates that the process finished in error.
If your process did not finish in error, be sure to include a "return
0" or "exit(0)" in your C code before exiting the application.

PID 29221 failed on node n1 (10.0.0.8) with exit status 1.
------------------------------------------------------------------------
-----
   ./Run.column_fft: Program error
make: *** [test.sander.BASIC.MPI] Error 1

===============================================

Yu Chen
chen_at_hhmi.umbc.edu
Baltimore, MD 21250

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