AMBER Archive (2006)

Subject: Re: AMBER: Phosphorylated protein MD simulation

From: Myunggi Yi (myunggi_at_gmail.com)
Date: Thu Oct 26 2006 - 10:13:17 CDT

I'm not an expert in this area.
Since nobody answers, I want to give some idea.

See: http://www.rosswalker.co.uk/tutorials/amber_workshop/Tutorial_four/

and Amber8 tutorial Page 254-263.

On 10/25/06, Fenghui Fan <fenghui_fan_at_yahoo.com> wrote:
> Dear all,
>
> I want to do MD simulation of a phosphorylated
> protein. Will you please tell me from the
> unphosphorylated protein, how can we get the
> coordinate file of the phosphorylated protein? And
> then how can we get the parmtop and inpcrd files?
>
> Best regards.
>
> Fenghui Fan
>
>
>
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-- 
Best wishes,

MYUNGGI YI
==================================
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Institute of Molecular Biophysics
Florida State University
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