AMBER Archive (2006)

Subject: AMBER: how to select the problematic residues(atoms) in VMD

From: Rachel (comeonsos_at_googlemail.com)
Date: Thu Oct 26 2006 - 06:00:21 CDT

 Dear AMBER users,

Hi! I am using VMD to view the trajectory from AMBER(the *.mdcrd file), from
the movie, I can see some of the bonds became so stretched (became so far
away from the protein), which obviously should not happen, however, how do I
know which bonds are they, which residues they belong to so that I can look
at them in more details? Thanks a lot for your help.

Best regards,
Rachel

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