AMBER Archive (2006)

Subject: AMBER: parameters !!??

From: Urszula Uciechowska (urszula.uciechowska_at_pharmazie.uni-halle.de)
Date: Wed Oct 25 2006 - 04:27:22 CDT

Dear Amber users,

I want to simulate a protein with the structural Zn ion. I added bonds
between the Zn and four cysteine sulphur atom in xleap
by typing : bond PROT.195.SG PROT.357.Zn, but I coulnd't create a top
and crd files beacause i need tha parameters for this.
I hope that somebody can help me in creating frcmod file.. I read also
the tutorial but it didnt help me, it still doesnt work with me.

Any suggestion would be very appreciated!!

Urszula

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu