AMBER Archive (2006)

Subject: AMBER: parameters !!??

From: Urszula Uciechowska (
Date: Wed Oct 25 2006 - 04:27:22 CDT

Dear Amber users,

I want to simulate a protein with the structural Zn ion. I added bonds
between the Zn and four cysteine sulphur atom in xleap
by typing : bond PROT.195.SG PROT.357.Zn, but I coulnd't create a top
and crd files beacause i need tha parameters for this.
I hope that somebody can help me in creating frcmod file.. I read also
the tutorial but it didnt help me, it still doesnt work with me.

Any suggestion would be very appreciated!!


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