AMBER Archive (2006)

Subject: AMBER: Using modified NA bases

From: sethl_at_gatech.edu
Date: Mon Oct 23 2006 - 14:59:15 CDT

Dear Amber Community,

I would like to know the most common way to go about building nucleic acid
complexes with custom/modified bases. Right now I have generated a library of
prep files that contain my modified bases but then how would I go about
constructing a structure file for a helicoidal duplex using these bases?

Thanks,
Seth

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