AMBER Archive (2006)

Subject: Re: AMBER: Amber 9 installation problem

From: Mark Williamson (
Date: Thu Oct 19 2006 - 11:12:01 CDT

Cenk Andac wrote:
> Dear Amber community,
> I have installed Amber9 for the first time using ifortx86_64 and intel's
> mkl library on PC-Linux SUSE 10.0. After the installation, execution of
> sander gave me the following error message:
> sander: error while loading shared libraries: cannot open
> shared object file: No such file or directory
> Could someone please let me know how to troubleshoot this problem.

Try compiling with the static flag:

        cd $AMBERHOME/src
        make clean
        configure -static ifort_x86_64 (and any other flags)

OR add the directory where MKL keeps its libs ( to the
LD_LIBRARY_PATH environment variable.

This is an example; you may need to adjust it to your situation

        export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:"/opt/intel/mkl/8.0/lib"


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