AMBER Archive (2006)

Subject: AMBER: alanine scan (mm/pbsa)

From: rob yang (nextgame_at_hotmail.com)
Date: Wed Oct 18 2006 - 09:46:47 CDT

Hi list,
I have a rudimentary question about how the mutation is made in an alanine scan (or other residue scan) in amber. Does each snapshot undergo a minimization after the mutation? If that's the case, do i need to minimize the wildtype snapshots too?

thank you very much in advance.

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