AMBER Archive (2006)

Subject: Re: AMBER: adding polar hydrogens

From: David A. Case (
Date: Wed Oct 11 2006 - 13:28:11 CDT

On Wed, Oct 11, 2006, Sean Rathlef wrote:

> As noted, I'm using just the protonate.exe from Autodock. THis was in my
> original two emails, and you suggested I ask on the Amber reflector

Sorry: I didn't even know that Autodock had a protonate command, and I
clearly don't know anything about it. I guess I probably led you up a blind
alley, unless someone here is also an Autodock user.


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