AMBER Archive (2006)

Subject: Re: AMBER: RE: Amber8: problem related to antechamber

From: David A. Case (
Date: Sun Oct 01 2006 - 08:35:55 CDT

On Wed, Sep 27, 2006, priya priya wrote:
> when I load single peptoid residues by antechamber and then i can view that
> residue by using edit command in leap.
> when i give the command 'sequence' (of peptoids) in leap, the leap window closes autamatically and the terminal displays:
> !FATAL ERROR----------------------------------------
> !FATAL: In file [chirality.c], line 121
> !FATAL: Message: Atom O is not in the first list

Have you applied bugfix.15 (for Amber 8) ? It gives a more complete error
message that is usually helpful here.


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