AMBER Archive (2006)

Subject: AMBER: structure from MD

From: Fenghui Fan (
Date: Tue Sep 26 2006 - 11:42:14 CDT

Dear all,

I want to get a structure from MD trajectory for
publication. In order to do this, should we use the
PDB file from the last rst file, or we get the average
structure from a plateau period, or we get the
structure by further energy minimized the average

I am looking forward to getting your reply.

Best regards.

Fenghui Fan

Do You Yahoo!?
Tired of spam? Yahoo! Mail has the best spam protection around
The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to