AMBER Archive (2006)

Subject: AMBER: DPPC Bilayer size

From: Akshay Patny (akshay17_at_olemiss.edu)
Date: Thu Sep 14 2006 - 13:47:45 CDT

Hi All

 

I am trying to simulate a GPCR protein belonging to the rhodopsin family
with amino acid length of 320 residues. Also, I would be using the
pre-hydrated DPPC bilayer, can somebody suggest that for a GPCR protein of
roughly 320 aa, how big DPPC bilayer would be appropriate to use e.g. 128
DPPC bilayer is available from Peter Tieleman's website
http://moose.bio.ucalgary.ca/index.php?page=Main .

 

Thanks

 

Akshay Patny
Graduate Research Assistant
Faser Hall 417, Department of Medicinal Chemistry

Research Institute of Pharmaceutical Sciences
University of Mississippi
University, MS 38677
E-mail: akshay17_at_olemiss.edu
Tel: 662-915-1286 (office); Web: www.olemiss.edu

 

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