AMBER Archive (2006)

Subject: Re: AMBER: post nmanal

From: David A. Case (case_at_scripps.edu)
Date: Sat Sep 09 2006 - 11:54:34 CDT

On Sat, Sep 09, 2006, ?$B?y?9_at_5F; wrote:
>
> I would like to do post processing of vector made by nmode, but nmanal
> is no longer available. Can anyone tell me the method of the post
> processing by ptraj?

What sort of analysis do you want to do? That is, what properties are you
trying to compute?

The basic ptraj commands are "analyze modes", "analyze matrix" and "projection
es". These are all described in the Users' Manual (pp. 259-260 for Amber9).

...dac

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