AMBER Archive (2006)

Subject: AMBER: help with antechamber - creating ligand

From: sethl_at_gatech.edu
Date: Tue Sep 05 2006 - 16:10:08 CDT

Dear Amber Community,

I created a mol2 file for a proflavine molecule using antechamber. When I do a
"loadmol2" antechamber crashes... I need help figuring out what I have done
wrong in creating my mol2 file. The mol2 file was created with:

"antechamber -i proflavine.pdb -fi pdb -o proflavine_charged.mol2 -fo mol2 -c
bcc"

I have attached both the pdb and the mol2 file if anyone wants to take a look.

Thanks as always,
Seth
Georgia Institute of Technology


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