AMBER Archive (2006)

Subject: AMBER: Implicit Water - Force field parameters

From: Ramdas Pophale (ramdas.pophale_at_gmail.com)
Date: Tue Sep 05 2006 - 14:22:49 CDT

Hello friends,

I am contemplating using amber94 force field for simulations of cyclic
peptides. It is an implicit solvent simulation where solvent effects are
taken into consideration through GB-SASA models. Since the parameter files
mention about TIP3P water model, does it mean the parameters are not
optimized (hence not a good choice) for the implicit solvent model? If
that's the case, could anyone suggest an alternative within or (without)
Amber? Thanks for your time.

Regards,

Ramdas Pophale.

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