AMBER Archive (2006)

Subject: AMBER: minimization with my own charges

From: Myunggi Yi (myunggi_at_gmail.com)
Date: Thu Aug 31 2006 - 17:01:24 CDT

Dear Amber users,

I want to minimize a structure with my own charges for some residues.
I think a simple way to assign my charges is using free energy perturbation.

I don't want the free energy calculation.
I will do only minimization with the perturbed charges.

It seems amber 9 is different from amber 7.

Would you suggest some idea? 

-- 
Best wishes,

MYUNGGI YI
==================================
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Institute of Molecular Biophysics
Florida State University
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Office: (850) 645-1334
http://www.scs.fsu.edu/~myunggi
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