AMBER Archive (2006)

Subject: Re: AMBER: generate "template" frcmod from standard residues?

From: David A. Case (case_at_scripps.edu)
Date: Thu Aug 17 2006 - 13:01:45 CDT

On Thu, Aug 17, 2006, mernst_at_tricity.wsu.edu wrote:

> If I do that, won't the template be devoid of assigned parameters? I want
> the parameters to initially reflect the standard force field parameters for
> a standard nucleotide so that I can alter them a bit rather than
> parameterizing the entire residue by hand. Maybe altered amino acids and
> nucleotides are less commonly used than I imagined.

Sorry...I guess I didn't understand what you wanted to do....dac

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