AMBER Archive (2006)

Subject: RE: AMBER: RE: AMBER Tutorial 2 section 6, rmsd calculation: rmsd for residues number?

From: a a (patd_2_at_hotmail.com)
Date: Tue Aug 15 2006 - 00:48:49 CDT

Dear Kateryna,

Thank you very much for your help!

Best regards,

Annie

>From: Kateryna Miroshnychenko <kateryna_mirosh_at_ire.kharkov.ua>
>Reply-To: amber_at_scripps.edu
>To: amber_at_scripps.edu
>Subject: AMBER: RE: AMBER Tutorial 2 section 6, rmsd calculation: rmsd for
>residues number?
>Date: Mon, 14 Aug 2006 16:19:46 +0300
>
>Dear Ann,
>
> > If I don't want to type in every atoms name after @, can I use Residue
> > number instead, if yes, could you mind to teach me how to do so?
>use ":" if you want to select by residue number.
>See example below (here the rms fit will be done on residues 1,2,3,4
>and 6)
>
> rms first out a-dna_0-1820ps.rmsfit :1-4,6 time 0.50
>
>
> regards,
> Kateryna
>
>********************************************
> Kateryna Miroshnychenko
>post-graduate student
>Department of Biological Physics,
>Institute of Radiophysics and Electronics,
>National Academy of Sciences of Ukraine,
>12, Proskura st., Kharkiv, 61085, Ukraine
>E-mail:kateryna_mirosh_at_ire.kharkov.ua
>********************************************
>
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