AMBER Archive (2006)

Subject: AMBER: PO2 in a DNA fragement, not a type in xleap? What can I do next?

From: a a (patd_2_at_hotmail.com)
Date: Thu Aug 10 2006 - 04:26:01 CDT

Dear Sir/Madam,

I got to do the analysis for a fragement of DNA, with one of the DNA base
pair with only PO2 remained. When I load the pdb file to xleap, it said it
is not type, it seems that I have to define some parameters for it. What
can I do? Can I use antechamber? Or are there any references values for
the needed parameters that I could use?

Best regards and many thanks in advanced,

Annie

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