AMBER Archive (2006)

Subject: AMBER: cutting the box after "solvatebox"

From: Vlad Cojocaru (Vlad.Cojocaru_at_eml-r.villa-bosch.de)
Date: Tue Aug 08 2006 - 07:12:37 CDT

Dear Amber users,

I created a box around a solute (loaded as pdb) using "solvatebox sol
TIP3PBOX {0 20 0}". However, I need to cut out from this box about 5A
from each side of the x and y directions and about 10A from 1 side of
the z direction. Is there any tool in Amber that can do that?

Thanks

vlad 

-- 
Dr. Vlad Cojocaru
EML Research gGmbH
Molecular and Cellular Modeling Group
Schloss-Wolfsbrunnenweg 33
69118 Heidelberg, Germany
Phone: +49-6221-533266
Fax: +49-6221-533298
e-mail: Vlad.Cojocaru_at_eml-r.villa-bosch.de
http://projects.villa-bosch.de/mcm/people/cojocaru/

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