AMBER Archive (2006)

Subject: AMBER: cutting the box after "solvatebox"

From: Vlad Cojocaru (
Date: Tue Aug 08 2006 - 07:12:37 CDT

Dear Amber users,

I created a box around a solute (loaded as pdb) using "solvatebox sol
TIP3PBOX {0 20 0}". However, I need to cut out from this box about 5A
from each side of the x and y directions and about 10A from 1 side of
the z direction. Is there any tool in Amber that can do that?



Dr. Vlad Cojocaru
EML Research gGmbH
Molecular and Cellular Modeling Group
Schloss-Wolfsbrunnenweg 33
69118 Heidelberg, Germany
Phone: +49-6221-533266
Fax: +49-6221-533298

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