AMBER Archive (2006)

Subject: Re: AMBER: problems with ptraj

From: David A. Case (case_at_scripps.edu)
Date: Thu Aug 03 2006 - 11:46:19 CDT

On Thu, Aug 03, 2006, anna.schrey_at_gmx.de wrote:

> PTRAJ: trajin ./sh3_cryst_NTV_100200ps_orest.mdcrd
> Checking coordinates: ./sh3_cryst_NTV_100200ps_orest.mdcrd
>
> Could not open file (./sh3_cryst_NTV_100200ps_orest.mdcrd) with mode (r)

Just some guesses: have you looked at the file permissions? If you examine the
file with a text editor, does it open OK? You could try re-naming the file
to a much shorter name, just to be sure you don't have any typos. You could
remove the "./" in front, although it looks to me like that is not a problem.

....dac

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