AMBER Archive (2006)

Subject: AMBER: Distance between two regions

From: Baker, Bo-Yang (BakerBY_at_peds.ucsf.edu)
Date: Mon Jul 31 2006 - 19:16:02 CDT

Hello Amber:

I would like to measure the minmum distances between two regions (two loops) of my target protein during MD run. I know how to measure the distance between two residues. Is there way to measure the distance between two regions, such from the center of each region?

Thank you for advices

Bo

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