AMBER Archive (2006)

Subject: AMBER: Having trouble with Nucgen for generating pdb more than 16 bps

From: amit_at_mbu.iisc.ernet.in
Date: Sun Jul 30 2006 - 13:51:05 CDT

Dear Amber Users,
   Nucgen is not able to generate a pdb file for a dsDNA of bp more 16. Is
there any way out of this. I have some 42 bps. How do i generate a pdb file
for this. I am attaching the input(nuc.in) and output (nuc.out) files it
generated.
thank in advance,

amit

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