AMBER Archive (2006)

Subject: AMBER: Building an RNA - Proflavin Complex

Date: Mon Jul 24 2006 - 15:05:49 CDT

Dear Amber Community,

        I am trying to intercalate an RNA sequence with proflavin. I read the paper
that where DNA was intercalated with ethidium but I would like some suggestion
as to the "easiest" way to build the initial starting structure. For now I am
beginning to use InsightII on an SGI machine, but before I venture too far I
would be greatful for any suggestions.

Seth Lilavivat
Georgia Institute of Technology


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