AMBER Archive (2006)

Subject: Re: AMBER: PDB from .rst?

From: priya priya (priyaanand_27_at_yahoo.co.in)
Date: Thu Jul 20 2006 - 22:24:08 CDT

hi
   
  You can make pdb from .rst using a command in AMBER8
   
  $AMBERHOME/exe/ambpdb -p filename.prmtop < filename.rst > filename.pdb
   
  then load this pdb in xleap using command
   
  filename = loadpdb "filename.pdb"
   
  then to have a view

  edit filename
   
  Regards
  Priya
  
Evan Kelly <ebkelly_at_ualberta.ca> wrote:
  Hi Everyone,

  This is probably a simple question, but I am trying to create a .pdb file from the sander output of a simulation I've done. I have the original .pdb file, inpcrd file, prmtop file, and the outputted .rst file. Can anyone suggest how this can be done?
  

  Thanks!
    

  ----------------------------------
  Evan Kelly
  ebkelly_at_ualberta.ca

                                 
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