AMBER Archive (2006)

Subject: Re: AMBER: Ring of dna

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Mon Jul 17 2006 - 14:19:49 CDT

> The problem is that at the stage where I type in the saveamberparm command,
> I still get this error message
>
> FATAL: Atom .R<THY 188>.A<H73 32> does not have a type
>
> for all the atoms. Any suggestions would be appreciated. Thanks for all
> the help so far.

Watch for warnings when loading pdb. In this case you need to
understand amber residue naming.. for the current amber ff
THY is not a residue, T or DT is, and it should include the
phosphate.

Bill
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