AMBER Archive (2006)

Subject: Re: AMBER: Ring of dna

From: Bill Ross (
Date: Sat Jul 15 2006 - 12:55:07 CDT

> The O3T atoms only occur on the final residues of the DNA.

That's because your residues were converted to terminal ones
when you loaded the pdb, which you need to avoid by either
disabling the residue name mapping or using loadpdbusingseq
or whatever the cmd is.

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