AMBER Archive (2006)

Subject: AMBER: applying restraints on pre-defined planes

From: Vlad Cojocaru (Vlad.Cojocaru_at_eml-r.villa-bosch.de)
Date: Tue Jul 11 2006 - 10:34:07 CDT

Dear Amber community,

I would like to run some simulations by applying distance and agle
restraints between 2 defined planes in my system. Does anybody have any
idea how to define such restraints in Amber8?

Just to make the task more clear: I would like to define 2 planes (each
defined by the positions of at least 3 atoms) and then run a simulation
in which to force the 2 planes to have a certain distance and agle
between each other?

Thanks a lot for any advices

Best wishes
vlad. 

-- 
Dr. Vlad Cojocaru
EML Research gGmbH
Molecular and Cellular Modeling Group
Schloss-Wolfsbrunnenweg 33
69118 Heidelberg, Germany
Phone: +49-6221-533266
Fax: +49-6221-533298
e-mail: Vlad.Cojocaru_at_eml-r.villa-bosch.de
http://projects.villa-bosch.de/mcm/people/cojocaru/

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