AMBER Archive (2006)

Subject: Re: AMBER: script to extract data from minimization .out file

From: sangeeta_at_bioinfo.ernet.in
Date: Sat Jul 08 2006 - 05:23:52 CDT

Hi Tanya,
You may also use the perl script "process_mdout.perl", available with
Amber. For details, have a look at the Amber Workshop Tutorial 2 Section
3.
Best wishes,
Sangeeta Sawant
Bioinformatics Centre
University of Pune
India

 On Fri, 7 Jul 2006, Tanya Johannsen wrote:

> Dear AMBER community:
>
> Does anyone have a script that can extract information
> (such as ENERGY) from a minimization .out file and put
> it in a data file that can be easily plotted? If
> anyone has such a script, I would be very grateful if
> I could borrow it. I looked at the listserv archive
> and tried the "plotamber" program that was suggested,
> but it doesn't seem to work on AMBER 8.
>
> Thank you very much in advance for any suggestions.
>
> Tanya
>
>
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