AMBER Archive (2006)

Subject: Re: AMBER: convert chemical structure to pdb file

From: Gustavo Seabra (gustavo.seabra_at_gmail.com)
Date: Fri Jul 07 2006 - 13:56:37 CDT

Hi,

I'm sorry, but your question is not very clear to me. Did you already
build this structure somehow? Do you have the NBD-cholesterol
structure in some format already, and just want to converto to pdb? Or
do you want to start from the separate structures, bind them, and then
make a pdb file?

Cheers,

Gustavo

On 7/7/06, Baker, Bo-Yang <BakerBY_at_peds.ucsf.edu> wrote:
> Hello, Amber:
>
> My question might beyond the AMBER topic. I would like to concert a chemical structure - NBD-cholesterol into pdb format. NBD is 7-nitro-4-benzofurazanyl) amino attached at 22N- of cholesterol. As far as I know, the cholesterol pdb is available. Is there anyway I can convert the NBD-cholesterol into pdb file?
>
> Thanks for your help.
>
> Bo
>
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